This web page was produced as an assignment for Genetics 677, an undergraduate course at UW-Madison.
Homology and Alignment
Protein homologs of HLA-DQA1
Homologous proteins are those that are derived from a common ancestor, and may have evolved independently from one another in various species. Based on results obtained using Homologene, I found protein homologs of HLA-DQA1 in a few different species. The four species that I chose to highlight in this homology analysis are: chimpanzee, domestic dog, mouse, and rat.
Pan troglodytes (chimpanzee)
Protein name: HLA-DQA1
Accession number: XP_527352.2
Canis lupus familiaris (domestic dog)
Protein name: HLA-DQA1
Accession number: NP_001011726.1
Protein name: HLA-DQA1
Accession number: XP_527352.2
Canis lupus familiaris (domestic dog)
Protein name: HLA-DQA1
Accession number: NP_001011726.1
Mus musculus (mouse)
Protein name: H2-Aa
Accession number: NP_034508.2
Rattus norvegicus (rat)
Protein name: RT1-Ba
Accession number: NP_001008831.1
Protein name: H2-Aa
Accession number: NP_034508.2
Rattus norvegicus (rat)
Protein name: RT1-Ba
Accession number: NP_001008831.1
Homolog Protein Sequences
| protein_homologues.doc |
ClustalW alignment
| clustalw_protein_alignment.docx |
T-Coffee alignment
| t-coffee_protein_alignment.docx |
MUSCLE alignment
| muscle_protein_alignment.docx |
